2015 / Oct / mRNAseq on non-model organisms¶
This workshop was actually cancelled :). Now I’m using it as a demo.
Tutorials:
- Welcome!
- Non-model organisms and RNAseq
- Getting started with Amazon EC2
- Short read quality and trimming
- Running digital normalization
- Running the actual assembly
- BLASTing your assembled data
- Annotation of denovo transcriptome
- Quantification and Differential Expression
- Remapping your reads to your assembled transcriptome
- Miscellaneous advice
- More resources
- Miscellaneous questions
- Tips and Tricks for working with Remote Computers
Technical information¶
The github repository for this workshop is publicly available at https://github.com/ngs-docs/2015-oct-nonmodel.
LICENSE: This documentation and all textual/graphic site content is licensed under the Creative Commons - 0 License (CC0) -- fork @ github. Presentations (PPT/PDF) and PDFs are the property of their respective owners and are under the terms indicated within the presentation.